Messed Up Nap Schedule

Being sick has gotten Milo's nap schedule all messed up and I hate it. He now take three short naps a day as opposed to the two long naps he used to take. He has also been waking up at 6:00 am recently too! The three nap thing has made it really hard to plan the day too. I used to know basically when he would go down and get up but now I have no idea and it's driving me nuts. Also there is a shorter period of time between naps so if we have to get out and do anything it make it a lot harder. It's effected his feeding schedule and everything else as well. I never knew how much of a mothers day revolved around a nap schedule. I REALLY want to him to go back to the previous nap schedule but if he keeps waking up at 6:00 am I really don't see how he can and I have no idea how to get him on the nap schedule I want him on either. He just fell into the first schedule so I have never actively tried to put him on one. Most of all though I want him to sleep later. I was never meant to be a morning person and this 6:00 am thing has me frazzled. UGH! I am so tired.